Finding the unloaded geometry#
from fenics_plotly import plot
import pulse
geometry = pulse.HeartGeometry.from_file(pulse.mesh_paths["simple_ellipsoid"])
# geometry = pulse.geometries.prolate_ellipsoid_geometry(mesh_size_factor=3.0)
material = pulse.NeoHookean()
# material = pulse.Guccione()
2024-05-16 07:57:22,677 [620] INFO pulse.geometry_utils:
Load mesh from h5
# Parameter for the cardiac boundary conditions
bcs_parameters = pulse.MechanicsProblem.default_bcs_parameters()
bcs_parameters["base_spring"] = 1.0
bcs_parameters["base_bc"] = "fix_x"
# Create the problem
problem = pulse.MechanicsProblem(geometry, material, bcs_parameters=bcs_parameters)
# Suppose geometry is loaded with a pressure of 1 kPa
# and create the unloader
unloader = pulse.FixedPointUnloader(problem=problem, pressure=3.0)
2024-05-16 07:57:22,809 [620] INFO pulse.unloader:
-------------------------- Unloading options ---------------------------
Target pressure: 3.0
maxiter = 10
tolerance = 0.0001
regenerate_fibers (serial only)= False
------------------------------------------------------------------------
# Unload the geometry
unloader.unload()
2024-05-16 07:57:22,814 [620] INFO pulse.unloader: ------------------------------------------------------------------------
2024-05-16 07:57:22,815 [620] INFO pulse.unloader: ----------------------------Start unloading-----------------------------
2024-05-16 07:57:22,815 [620] INFO pulse.unloader: ------------------------------------------------------------------------
2024-05-16 07:57:22,846 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:57:22,847 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:57:22,847 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:57:22,848 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:57:23,022 [620] DEBUG UFL_LEGACY: Blocks of each mode:
1 full
2024-05-16 07:57:23,843 [620] INFO pulse.unloader:
LV Volume of original geometry = 0.749 ml
2024-05-16 07:57:23,860 [620] INFO pulse.unloader:
Do an intial solve
2024-05-16 07:57:23,952 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:57:23,952 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:57:23,953 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:57:23,953 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:57:23,954 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:57:24,467 [620] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2024-05-16 07:57:24,544 [620] DEBUG UFL_LEGACY: Blocks of each mode:
2024-05-16 07:57:24,755 [620] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2024-05-16 07:58:03,491 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:58:03,492 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:58:03,492 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:58:03,493 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:58:03,494 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:58:03,691 [620] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2024-05-16 07:58:03,767 [620] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-05-16 07:58:03,961 [620] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-05-16 07:58:07,429 [620] INFO pulse.unloader:
Iteration: 0
2024-05-16 07:58:11,006 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-05-16 07:58:11,049 [620] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-05-16 07:58:15,289 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:58:15,293 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-05-16 07:58:15,340 [620] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-05-16 07:58:15,740 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:58:15,784 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:58:15,785 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:58:15,826 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:58:15,827 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:58:15,864 [620] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.568 ml
2024-05-16 07:58:16,019 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:58:16,020 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:58:16,020 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:58:16,021 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:58:16,021 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:58:16,382 [620] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2024-05-16 07:58:16,458 [620] DEBUG UFL_LEGACY: Blocks of each mode:
2024-05-16 07:58:16,669 [620] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2024-05-16 07:58:55,274 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:58:55,275 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:58:55,276 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:58:55,276 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:58:55,277 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-05-16 07:58:55,419 [620] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2024-05-16 07:58:55,494 [620] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-05-16 07:58:55,685 [620] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-05-16 07:58:59,192 [620] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.568 ml
2024-05-16 07:58:59,363 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:58:59,364 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:58:59,407 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:58:59,408 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:58:59,449 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:58:59,450 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:58:59,488 [620] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.717 ml
2024-05-16 07:58:59,500 [620] INFO pulse.unloader:
Residual: 0.011328623428538017
2024-05-16 07:58:59,500 [620] INFO pulse.unloader:
Iteration: 1
2024-05-16 07:58:59,672 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:58:59,673 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:58:59,715 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:58:59,716 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:58:59,757 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:58:59,758 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:58:59,795 [620] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.596 ml
2024-05-16 07:59:02,798 [620] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.596 ml
2024-05-16 07:59:02,970 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:02,971 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:03,013 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:03,014 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:03,055 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:03,056 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:03,095 [620] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.754 ml
2024-05-16 07:59:03,106 [620] INFO pulse.unloader:
Residual: 0.001698010214540199
2024-05-16 07:59:03,107 [620] INFO pulse.unloader:
Iteration: 2
2024-05-16 07:59:03,278 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:03,280 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:03,321 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:03,322 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:03,363 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:03,364 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:03,401 [620] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.592 ml
2024-05-16 07:59:06,411 [620] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.592 ml
2024-05-16 07:59:06,586 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:06,588 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:06,630 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:06,631 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:06,672 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:06,673 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:06,711 [620] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.749 ml
2024-05-16 07:59:06,722 [620] INFO pulse.unloader:
Residual: 0.0002592876931300245
2024-05-16 07:59:06,723 [620] INFO pulse.unloader:
Iteration: 3
2024-05-16 07:59:06,894 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:06,895 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:06,936 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:06,937 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:06,978 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:06,979 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:07,016 [620] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.593 ml
2024-05-16 07:59:10,023 [620] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.593 ml
2024-05-16 07:59:10,194 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:10,196 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:10,237 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:10,238 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:10,280 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:10,281 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:10,319 [620] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.750 ml
2024-05-16 07:59:10,330 [620] INFO pulse.unloader:
Residual: 3.931304295917144e-05
2024-05-16 07:59:10,331 [620] INFO pulse.unloader: ########################################################################
Unloading suceeding
# Get the unloaded geometry
unloaded_geometry = unloader.unloaded_geometry
2024-05-16 07:59:10,506 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:10,507 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:10,549 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:10,550 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:10,590 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-05-16 07:59:10,591 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
fig = plot(geometry.mesh, opacity=0.0, show=False)
fig.add_plot(plot(unloaded_geometry.mesh, color="red", show=False))
fig.show()